OBO Foundry dashboard analysis¶

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/tmp/ipykernel_6607/4293058459.py:21: FutureWarning:

The `inplace` parameter in pandas.Categorical.reorder_categories is deprecated and will be removed in a future version. Reordering categories will always return a new Categorical object.

Ontologies by number of axioms

Ontologies by number of classes

Ontologies by how many ontologies use it

Different serialisations used

RDF/XML Syntax    181
unknown             2
OWL/XML Syntax      1
RDF/XML             1
Name: syntax, dtype: int64

Breakdown of used Axiom Types

count mean std min 25% 50% 75% max
AnnotationAssertion 183 156694.940541 831100.137455 0.0 1471.0 7070.0 31709.0 10277412.0
Declaration 183 29620.178378 193276.841123 0.0 475.0 1285.0 5382.0 2509851.0
SubClassOf 178 39917.718919 219838.551895 0.0 362.0 1327.0 6554.0 2509819.0
EquivalentClasses 128 2731.259459 13815.345237 0.0 0.0 25.0 222.0 126754.0
SubAnnotationPropertyOf 117 9.389189 20.612098 0.0 0.0 2.0 7.0 166.0
TransitiveObjectProperty 113 5.945946 10.203756 0.0 0.0 2.0 6.0 58.0
SubObjectPropertyOf 105 42.437838 99.174515 0.0 0.0 2.0 35.0 684.0
DisjointClasses 96 30.264865 101.107993 0.0 0.0 1.0 21.0 843.0
ObjectPropertyDomain 85 14.854054 27.830334 0.0 0.0 0.0 18.0 148.0
ObjectPropertyRange 85 14.567568 26.938881 0.0 0.0 0.0 19.0 142.0
InverseObjectProperties 80 9.178378 17.888105 0.0 0.0 0.0 12.0 113.0
SubPropertyChainOf 65 10.281081 27.478389 0.0 0.0 0.0 2.0 149.0
ClassAssertion 64 83.140541 492.876166 0.0 0.0 0.0 18.0 5528.0
FunctionalObjectProperty 50 0.832432 1.693667 0.0 0.0 0.0 1.0 9.0
SymmetricObjectProperty 48 1.637838 8.472056 0.0 0.0 0.0 1.0 81.0
DataPropertyRange 43 1.156757 3.318635 0.0 0.0 0.0 0.0 30.0
DataPropertyDomain 39 1.043243 3.099486 0.0 0.0 0.0 0.0 32.0
IrrefexiveObjectProperty 37 0.486486 1.375674 0.0 0.0 0.0 0.0 9.0
DifferentIndividuals 35 0.794595 6.049701 0.0 0.0 0.0 0.0 82.0
AnnotationPropertyRangeOf 32 1.318919 10.506257 0.0 0.0 0.0 0.0 139.0
EquivalentObjectProperties 31 1.513514 5.582492 0.0 0.0 0.0 0.0 36.0
InverseFunctionalObjectProperty 30 0.210811 0.555498 0.0 0.0 0.0 0.0 4.0
SubDataPropertyOf 29 0.762162 3.417932 0.0 0.0 0.0 0.0 33.0
Rule 26 2.183784 6.717818 0.0 0.0 0.0 0.0 31.0
FunctionalDataProperty 24 0.475676 1.518259 0.0 0.0 0.0 0.0 11.0
AsymmetricObjectProperty 21 0.400000 1.697825 0.0 0.0 0.0 0.0 18.0
ObjectPropertyAssertion 15 18.178378 132.015174 0.0 0.0 0.0 0.0 1265.0
DisjointObjectProperties 14 0.216216 1.126150 0.0 0.0 0.0 0.0 10.0
ReflexiveObjectProperty 12 0.108108 0.453476 0.0 0.0 0.0 0.0 3.0
DisjointUnion 7 0.086486 0.554704 0.0 0.0 0.0 0.0 5.0
AnnotationPropertyDomain 7 0.162162 1.385357 0.0 0.0 0.0 0.0 17.0
DataPropertyAssertion 5 0.172973 1.588794 0.0 0.0 0.0 0.0 20.0
DatatypeDefinition 2 0.108108 1.398442 0.0 0.0 0.0 0.0 19.0

Breakdown of used OWL Class Expression constructs

count mean std min 25% 50% 75% max
Class 182 121747.054054 647181.694348 0.0 1486.0 5259.0 21769.0 7529459.0
ObjectSomeValuesFrom 161 17851.227027 89574.015841 0.0 34.0 445.0 2982.0 880495.0
ObjectIntersectionOf 122 4239.005405 20840.515624 0.0 0.0 30.0 481.0 213366.0
ObjectUnionOf 87 23.291892 72.385976 0.0 0.0 0.0 13.0 767.0
ObjectAllValuesFrom 73 30.875676 153.949917 0.0 0.0 0.0 6.0 1764.0
ObjectComplementOf 64 14.416216 89.702981 0.0 0.0 0.0 2.0 1132.0
ObjectMinCardinality 62 2.237838 7.822604 0.0 0.0 0.0 1.0 59.0
ObjectExactCardinality 47 9.718919 89.148672 0.0 0.0 0.0 1.0 1205.0
ObjectOneOf 45 3.691892 28.477245 0.0 0.0 0.0 0.0 275.0
DataMinCardinality 26 0.243243 0.683875 0.0 0.0 0.0 0.0 4.0
DataSomeValuesFrom 21 6.675676 64.066055 0.0 0.0 0.0 0.0 859.0
DataExactCardinality 21 0.508108 1.591823 0.0 0.0 0.0 0.0 7.0
ObjectHasValue 20 223.518919 1921.734334 0.0 0.0 0.0 0.0 21288.0
ObjectHasSelf 18 0.237838 0.959889 0.0 0.0 0.0 0.0 6.0
DataHasValue 18 119.081081 1564.975343 0.0 0.0 0.0 0.0 21288.0
ObjectMaxCardinality 17 0.572973 3.406567 0.0 0.0 0.0 0.0 41.0
DataAllValuesFrom 2 2.367568 31.834918 0.0 0.0 0.0 0.0 433.0
DataMaxCardinality 2 0.010811 0.103692 0.0 0.0 0.0 0.0 1.0

OBO Score (Experimental)

ontology score score_dash score_impact
120 omo 0.958 0.949 0.968
150 ro 0.857 0.956 0.757
8 bfo 0.784 0.778 0.789
64 go 0.723 0.949 0.497
132 pato 0.716 0.956 0.476
110 obi 0.694 0.971 0.416
20 cl 0.626 0.949 0.303
167 uberon 0.619 0.860 0.378
101 ncbitaxon 0.609 0.822 0.395
44 envo 0.564 0.949 0.178
144 pr 0.548 0.853 0.243
35 doid 0.542 0.949 0.135
14 chebi 0.529 0.631 0.427
176 wbphenotype 0.502 0.993 0.011
175 wbls 0.502 0.993 0.011
100 nbo 0.500 0.882 0.119
93 mondo 0.499 0.949 0.049
69 hp 0.495 0.867 0.124
139 plana 0.494 0.978 0.011
108 oba 0.494 0.956 0.032
113 ogms 0.490 0.727 0.254
5 apollo_sv 0.489 0.882 0.097
40 eco 0.488 0.971 0.005
11 caro 0.482 0.733 0.232
52 fbdv 0.482 0.949 0.016
164 trans 0.477 0.927 0.027
111 obib 0.476 0.920 0.032
36 dpo 0.474 0.949 0.000
95 mp 0.469 0.889 0.049
122 omrse 0.467 0.838 0.097
160 symp 0.466 0.882 0.049
63 gno 0.466 0.927 0.005
42 ecto 0.464 0.911 0.016
128 opl 0.464 0.911 0.016
46 eupath 0.453 0.889 0.016
61 geno 0.452 0.882 0.022
82 maxo 0.452 0.882 0.022
58 fypo 0.447 0.889 0.005
138 phipo 0.447 0.882 0.011
134 pco 0.446 0.778 0.114
170 vbo 0.445 0.889 0.000
50 fbbt 0.442 0.867 0.016
98 mro 0.441 0.882 0.000
73 iao 0.441 0.882 0.000
51 fbcv 0.441 0.860 0.022
32 ddpheno 0.436 0.867 0.005
174 wbbt 0.435 0.860 0.011
13 cdno 0.433 0.867 0.000
53 fideo 0.433 0.867 0.000
173 vto 0.433 0.867 0.000
127 oostt 0.432 0.853 0.011
182 zfa 0.430 0.844 0.016
17 chmo 0.429 0.809 0.049
184 zp 0.427 0.844 0.011
125 ontoavida 0.426 0.853 0.000
37 dron 0.426 0.771 0.081
41 ecocore 0.424 0.838 0.011
25 cob 0.424 0.822 0.027
104 ngbo 0.419 0.838 0.000
94 mop 0.418 0.809 0.027
152 rxno 0.418 0.831 0.005
66 hancestro 0.416 0.816 0.016
1 agro 0.413 0.822 0.005
80 lepao 0.411 0.822 0.000
133 pcl 0.411 0.822 0.000
181 zeco 0.408 0.816 0.000
59 gecko 0.403 0.800 0.005
180 xpo 0.403 0.800 0.005
141 po 0.397 0.698 0.097
7 bco 0.396 0.787 0.005
75 ico 0.396 0.749 0.043
117 ohpi 0.394 0.787 0.000
140 planp 0.392 0.778 0.005
149 rbo 0.388 0.771 0.005
163 to 0.385 0.764 0.005
38 duo 0.383 0.749 0.016
146 psdo 0.382 0.764 0.000
12 cdao 0.381 0.756 0.005
47 exo 0.380 0.733 0.027
9 bspo 0.376 0.660 0.092
168 uo 0.373 0.578 0.168
56 foodon 0.373 0.660 0.086
2 aism 0.371 0.727 0.016
159 swo 0.369 0.727 0.011
76 ido 0.367 0.616 0.119
57 fovt 0.366 0.733 0.000
26 colao 0.366 0.733 0.000
45 epio 0.363 0.727 0.000
161 t4fs 0.363 0.727 0.000
21 clao 0.362 0.720 0.005
102 ncit 0.361 0.593 0.130
0 ado 0.360 0.720 0.000
145 proco 0.360 0.720 0.000
158 stato 0.357 0.622 0.092
43 emapa 0.354 0.704 0.005
79 labo 0.352 0.704 0.000
178 xco 0.349 0.682 0.016
70 hsapdv 0.347 0.667 0.027
116 ohmi 0.347 0.689 0.005
10 bto 0.346 0.653 0.038
29 cto 0.345 0.684 0.005
130 ornaseq 0.344 0.689 0.000
34 disdriv 0.344 0.689 0.000
60 genepio 0.338 0.638 0.038
169 upheno 0.335 0.638 0.032
16 chiro 0.334 0.667 0.000
78 kisao 0.334 0.667 0.000
39 ecao 0.334 0.667 0.000
15 cheminf 0.334 0.667 0.000
19 cio 0.334 0.667 0.000
4 apo 0.334 0.667 0.000
68 hom 0.334 0.667 0.000
136 pdumdv 0.334 0.667 0.000
177 xao 0.330 0.644 0.016
135 pdro 0.330 0.638 0.022
30 cvdo 0.328 0.644 0.011
162 taxrank 0.328 0.644 0.011
143 ppo 0.327 0.653 0.000
97 mpio 0.325 0.644 0.005
28 cteno 0.322 0.644 0.000
3 amphx 0.322 0.644 0.000
81 ma 0.322 0.644 0.000
27 cro 0.322 0.644 0.000
91 mmusdv 0.322 0.644 0.000
154 scdo 0.322 0.638 0.005
156 so 0.322 0.460 0.184
118 olatdv 0.322 0.644 0.000
90 mmo 0.316 0.616 0.016
129 opmi 0.316 0.593 0.038
71 hso 0.316 0.631 0.000
62 geo 0.310 0.571 0.049
109 obcs 0.310 0.593 0.027
89 miapa 0.308 0.616 0.000
49 fbbi 0.308 0.616 0.000
84 mf 0.308 0.578 0.038
48 fao 0.308 0.600 0.016
55 fobi 0.308 0.616 0.000
112 ogg 0.302 0.549 0.054
153 sbo 0.302 0.600 0.005
107 oarcs 0.300 0.600 0.000
67 hao 0.300 0.600 0.000
166 txpo 0.299 0.593 0.005
106 oae 0.298 0.504 0.092
179 xlmod 0.296 0.593 0.000
142 poro 0.296 0.593 0.000
31 ddanat 0.294 0.578 0.011
183 zfs 0.294 0.578 0.011
148 pw 0.290 0.564 0.016
83 mco 0.289 0.578 0.000
54 flopo 0.288 0.571 0.005
119 omit 0.287 0.542 0.032
151 rs 0.284 0.564 0.005
86 mfoem 0.277 0.549 0.005
96 mpath 0.277 0.511 0.043
65 gsso 0.277 0.527 0.027
137 peco 0.272 0.511 0.032
23 clyh 0.267 0.533 0.000
124 ons 0.267 0.511 0.022
99 ms 0.266 0.520 0.011
115 ohd 0.264 0.527 0.000
103 ncro 0.258 0.504 0.011
165 tto 0.256 0.511 0.000
147 pso 0.256 0.511 0.000
126 ontoneo 0.252 0.504 0.000
105 nomen 0.252 0.504 0.000
88 mi 0.245 0.467 0.022
87 mfomd 0.245 0.467 0.022
6 aro 0.245 0.467 0.022
121 omp 0.245 0.467 0.022
172 vt 0.242 0.467 0.016
77 ino 0.241 0.460 0.022
18 cido 0.239 0.467 0.011
171 vo 0.237 0.393 0.081
85 mfmo 0.234 0.467 0.000
123 one 0.230 0.460 0.000
74 iceo 0.230 0.460 0.000
72 htn 0.230 0.460 0.000
92 mod 0.227 0.438 0.016
33 dideo 0.222 0.438 0.005
157 spd 0.219 0.438 0.000
22 clo 0.202 0.333 0.070
131 ovae 0.197 0.393 0.000
114 ogsf 0.197 0.393 0.000
24 cmo 0.000 0.000 0.000
155 sepio 0.000 0.000 0.000

OBO Score Summary

count mean std min 25% 50% 75% max
score 185.0 0.375119 0.122462 0.0 0.302 0.360 0.435 0.958
score_dash 185.0 0.696335 0.173553 0.0 0.593 0.684 0.844 0.993
score_impact 185.0 0.053805 0.134019 0.0 0.000 0.011 0.032 0.968

OBO dependency graph